
Personal data


Education


30/7/1980
 General certificate of education in science
(maturità scientifica). Mark 60/60.

13/7/1989
 Master degree (Laurea) in Physics of the University
of Florence Mark 110/110
with honors. Director of thesis: Prof. S. Ruffo.
Title: Aspetti teorici legati alla
simulazione di modelli fisici tramite
automi cellulari (Theoretical aspects related to the
simulation of physical models by means of cellular automata).

19/5/1994
 Diplôme d’Étude Approfondi (DEA) of the University
Pierre et Marie Curie
(Paris 6).

16/6/1997
 PhD in Theoretical Physics of the University Pierre
et Marie Curie (Paris 6).
Director: Nino Boccara. Mark Très Honorable. Title of thesis: Etude de quelques modèles
discrets en physique et biologie

15/9/1997
 Equivalence with the Italian PhD by Ministero
della Università e Ricerca
Scientifica.

Schools


1724/9/1987
 Advanced School on Programming Methodologies
(I.A.S.I. – Roma).

918/9/1991
 Sexta escuela mexicana de fisica estadistica
(Guanajuato, Mexico).

10/55/6/1993
 Ecole de physique de la matière condensée (BegRohu,
Francia).

15/615/7/1995
 Ecole de physique de la matière condensée (BegRohu,
Francia).

Research topics

My main field of investigation
concerns fully discrete systems, also known as cellular automata. A
cellular automaton is a dynamical systems defined on a lattice,
where time, space and dynamical
variables are discrete. Many classical models, like the Ising
model, or integration schemes of partial
differential equations, may be reformulated in terms of cellular
automata, eventually with
continuous variables (i.e., coupled map lattices). The dynamical
rule of cellular automata
may be deterministic or stochastic, and therefore one can
investigate their properties
using tools from dynamical systems or statistical mechanics.
Cellular automata and,
to a good extent, coupled map lattices, fir very well with a
computer architecture.
So, another way of considering these model is the following:
instad of formulating a
problem using continuous variables (i.e., partial differential
equations), and then find a
scheme to approximately compute the evolution of these equations
on a computer,
one can start from a microscopic model that fits well with the
computer architecture
and that, in the macroscopic limit, leads to the desired
equations. One such scheme is
applied to hydrodynamics. Lattice gas cellular automata are
discrete models that are
exactly computable and that, averaged over space, lead to a
hydrodynamical description.
Starting from such a model one can find a Boltzmann approximation
(lattice boltzmann
equation) that is particularly efficient in computational terms,
still retaining many
of the advantages of cellular automata (for instance, flexibility
in choosing boundary
conditions).
Cellular automata may be used
to model physical systems, or as mathematical models by itself.
One of the main motivations for this study is to investigate the
origin of complexity in extremely
simplified systems.
Finally, cellular automata
and similar schemes (for instance, using nonhomogeneus rules,
disordered lattices, etc.) are also well suited to investigate
biological systems.
In particular the main
research themes that I am developing are:
 A unified view of phase transitions with
absorbing states (directed percolation) and
synchronization of spatially extended systems, including
definition of unpredictability
in discrete (or stable) systems, definition of Lyapunov
exponents for discrete systems
and theirs relation with entropy.
 Role of competition in speciation and in
coevolution of ecosystems (in particular virus
and immune system).
 Opinion formation in simple
societies, with simple and complex individuals and
networks. Connections between genetics and sociology in
spreading of epidemics.
 Distance learning, automatic quiz
management, detachable learning objects.

Mathematical and statistical properties of
cellular automata

During my master thesis (director S. Ruffo), I
developed (after a project of N.
Cabibbo and in collaboration with A. Francescato) a
specialpurpose computer for
highspeed simulation of cellular automata [46,
48].
Using this machine and also a
CAM1 (by T. Toffoli), I’ve studied the statistical behavior
of a classical model (Game
of life) [2].
During this study I developed the concept of Boolean
derivatives [5],
applied to the Taylor development of Boolean
functions [6].
The minimization of
Boolean functions is a classical NP problem, so a general
result cannot be obtained.
Nevertheless, my formalism, that exploits in a natural way
the nonforcing properties of
the XOR function, seems to give good results for many
practical purposes, e.g. in the
development of microcode for integrated circuits. Moreover,
it has a physical meaning
and may be used to extend the idea of Lyapunov exponents to
discrete systems [9,
55,
57,
59,
68],
and to apply the concept of replica symmetry breaking to nonequilibrium
systems [12].
This replica symmetry
breaking transition (damage spreading) may be included in
the general framework of nonequilibrium phase
transitions in systems with one or
more absorbing states. These systems exhibit phase
transitions also in one spatial
dimensions and with shortrange interactions due to the
presence of one or more states
at infinite negative energy, that act as absorbing states.
I’ve studied such systems
using renormalization group techniques [7,
54],
and investigated the critical properties
of symmetric absorbing states [22,
66].
Another technique to promote nonequilibrium
phase transition is to add, to an equilibrium system, a
nonconservative external field [8].
Systems with
continuous phase transitions exhibit a critical state (extremely
long
correlations, slow dynamics, powerlaw behavior) in the
vicinity of the critical point.
However, the critical value of the control parameter has to
be finely adjusted and is
very sensitive to external perturbations. However, many
natural systems behaves as
if they were at the critical point, with automatic
finetuning of parameters. Another
point of view is that the role of control and order parameter
is reversed, since in
principle is much easier to keep the order parameter pinned
to its critical value (usually
zero) and let the control parameter adjust to its critical
value. For such systems the
term “selforganized criticality” has been forged. A
classical example is the sandpile
model, that in the fixedenergy version shows nontrivial
behavior [27].
An interesting
application of Boolean analysis is that it is possible to
transform a critical system into
a selforganized one [13].

Synchronization transitions

Somewhat related to phase
transitions with absorbing states, I’ve studied the problem
of synchronization of extended systems. Chaoticity is
related by the divergence
of trajectories; however, both direct coupling or
common noise may favor the
synchronization of chaotic systems. In spatially extended
systems (i.e., system described
by partial differential equations, or coupled map
lattices or cellular automata),
synchronization between two replicas of the same system may
occur in many different
ways. The synchronized state of two identical system
cannot be abandoned and
therefore act as an absorbing state. However, a
conjecture by Grassberger states
that the critical properties of the transitions are different
is this absorbing state is
stable against perturbations or not. In the first case the
transition has the character
of directed percolation, and in the second it is related to
the KardarParisiZhang
roughening transition. With P. Palmerini (master in Physics
under my direction), L.
Baroni (PhD student under the direction of R. Livi) F.
Cecconi and R. Rechtman,
we have investigated this problem in the context of chaotic
systems [18].
We have
also shown that a related phenomena is present in nonchaotic
systems, like stable
coupled maps [23]
and cellular automata [19],
contributing to the definition of
unpredictability in nonchaotic system. Actually,
unpredictability in extended system
has two origins: local chaoticity, i.e. production of
information, present in chaotic
systems, and propagation of information, present also in some
nonchaotic system. We
also showed that synchronization is useful in defining
unpredictability and complements
the usual definition based on chaoticity (i.e., positivity of
Lyapunov exponents).

Modelling of physical systems

During my master thesis, I’ve
spend some time studying experimentally (under the
guide of S. Ciliberto) the RayleighBènard convection in an
annular cell [1],
and then
I’ve tried to interpret some related experimental data
using a cellular automaton
model [47,
49].
After master thesis, I’ve
collaborated with some researcher in Geneva and Mons, and
applied cellular automata modeling to physical systems
in the study of fast ionic
conductors [4]
and catalysers [3,
51].
A more classic approach
(numerical computation of impact probabilities) has been used
in the modelling of a radon detector [20,
25],
getting result in good agreement with
experimental data.
I’ve also developed
(with C. Guardiani) a very simple model for polymer stretching [37]
(see next section).
Fluid systems may
also be studied using lattice cellular automata, although their
thermal properties may be quite unusual [56,
52,
10].
At present, R. Rechtman and
myself are studying the chaotic properties of such systems
and their connection with
entropy [82].
These models can be
used to study the relationship between dynamic properties
(Lyapunov exponents and KolmogorovSinai entropy) and
statistical properties
(thermodynamic entropy) [43].
This correspondence should have a general validity.
A generalization of
lattice cellular automata, the lattice Boltzmann equation (LBE),
can be successfully applied to model fluids in complex
geometries, or with thermal
effects. During his master thesis (under my supervision),
Luca Sguanci investigated the
possibility of using LBE for modeling sand transportation. We
found that the large
difference in density between sand and water caused large
shocks, so that LBE cannot
be approximated by linear terms, inducing numerical
instabilities. We prefer to use a
simpler phenomenological CA model for sand transportation,
that reproduces some of
the characteristics of ripple formation with a very efficient
coding [80].
A joint study with the
Laboratory of solar energy in Temixco, Mexico (R. Rechtman)
is in progress about modelling of thermal properties of
fluids and transport of particles
using LBE.
Finally, I’ve started
studying granular systems, in connection with experiments
performed at CINVESTAV, Merida (Mexico) with C. Ruiz
and the experimental
facilities of the Institute of Complex Systems (CNR,
Florence) and the Center for
the Study of Complex System (CSDC, University of Florence).
In this field I’m also
collaborating with A. Guarino, of the university of French
Polynesia.

Biology

Many of the techniques used in theoretical physics may
be successfully applied to
biology, which is a rapidly growing research field.
My main contribution to this
field are the studies, fist performed with a PhD student
under the direction of Roberto Livi, M. Bezzi, and then with
L. Sguanci (who completed
his master and PhD studies under my direction), C. Guardiani
(master studies under
my direction) and P. Lió (lecturer in computer science in
Cambridge, UK) about the
role of competition in promoting sympatric speciation [58,
11,
14,
15,
21].
This idea
complements well with that of quasispecies to explain
patterns of viral evolution [64,
36,
30,
77,
81]
and the emergence of typical speciation patterns [32,
33].
The basic
idea is that quasispecies form around maxima of fitness, with
a width that depends
on the curvature of the maximum and the mutation rate.
However, the fitness of a
given species depends not only on the characteristics of that
species, but also on the
ecosystem population, through predation, feeding and
competition. In particular, an
individual competes strongly with other individuals of the
same species, with which
the sharing of resources is maximum. This simple ingredient
allows to justify speciation
events in extremely structureless and homogeneous
environments.
With P. Lió and G.
Guasti (who performed part of her master thesis under my
direction), we have also studied codon usage in bacteria [11,
58].
I’m also interested in
the topological and metric structure of genotype space [24,
26],
and in the interplay between sociology and genetics in
epidemics[79]
Moreover, in Florence
I’m collaborating with the experimentalists of CSDC and ISC, in
particular in experiments concerning Atomic Force Microscopy
(AFM). In this context I
developed (with C. Guardiani) a simple model of polymer
stretching [37]
that illustrates
well the role of entropy in the interpretation of AFM
experiments.

Sociophysics

I’ve started an activity of
modelling of opinion formation in social systems [69,
78],
using techniques similar to that used in biological modeling,
in collaboration with R.
Rechtman (Temixco, Mexico), D. Fanelli (now at Manchester
University), T. Carletti
(University of Notre Dame de la Paix), A. Guarino (University
of French Polynesia)
and A. Guazzini (PhD student in Nonlinear Systems and Complex
Dynamics, Univ.
Florence).
I also developed a model
of individual [31],
that can be applied as a datamining
instrument in many fields. [72].
It is interesting to
investigate the role of perception of disease in epidemic
spreading [79]:
usual model of epidemics when applied to social networks (of scalefree
or smallworld character) give immediate spreading, which is
rather inconsistent with
observation. By including psychology, one can recover more
plausible patterns.

Distance teaching

I actively develop software for
distance teaching, in particular I designed and installed
(with the help of F. Franci, a former PhD student of myself),
the system WebTeach [70,
71,
73].
A main point of this system is WebCheck, a management system
for
mathematical quiz that includes paper handling and parametric
quiz generation.
At present, I’m developing
techniques based on detachable learning objects (web pages
that can be used without Internet connection) and teaching by
digital TV.

Other activities

 I am part of the Center for the Study
of Complex Dynamics (CSDC).
 I’m the Italian organizer of the
ItalyGreece agreement about researcher exchange
on “The structure of internet as a complex
network: virus spreading and
immunization techniques (20072008).
 I am the coordination of the Cultural
Agreement between the University of Florence
and the University of Gdansk (Poland).

Conferences


10/1986
 Nonlinear Dynamics and Stochastic Processes Roma,
Italy, oral presentation A
Cellular Automata Generator [46].

4/1987
 Convegno di fisica teorica di struttura della materia,
Fai della Paganella, Italy.

9/1987
 Measure of Complexity, Roma.

10/1987
 Chaos and Complexity ISI, Torino, Italy, oral
presentation Cellular Automata
Model for a Fluid Experiment [47].

8/1988
 Molecular Dynamics and Dynamical Sistems OrsayParis,
France, oral presentation
A Cellular Automata Machine.

26/97/10/1988
 Computer Symulations of
Cellular Automata C.E.C.A.M. – Paris,
France, oral presentation A Cellular
Automata Machine.

1/1989
 XVIII Statistical Physics Winter Meeting,
Oaxtepec, Mexico.

2/1989
 Cellular Automata and Modeling of Complex
Physical Systems, Les Houches,
Francie, oral presentation A Cellular
Automata Machine [48],
oral presentation Phase
Transitions in Convection Experiments [49],
oral presentation Periodic Orbits in a
Coupled Map Lattice Model [50].

6/1989
 Nonlinear Dynamics and Stochastic Processes,
Sammommè, Italy.

6/1989
 Cellular Automata Applications in Physical Chemistry,
Université de l’Etat, Mons,
Belgium, oral presentation Kinetic
Phase Transitions in a Surface Reaction Model with
Local Interactions.

615/3/1990
 Complexity and Evolution,
Les Houches, France.

15/415/5/1990
 Complexity and Evolution,
ISI, Torino, Italy.

713/6/1990
 Microscopic Aspect of
NonLinearity in Condensed Matter, Firenze, Italy,
poster A Model of Catalytic Reaction
with Local Interactions [51].

22/62/7/1992
 Cellular Automata and
Cooperative Systems, Les Houches, France, oral
presentation Renormalization Group
Analysis of Directed Models [54],
oral presentation
Maximal Lyapunov Exponent for 1D
Boolean Cellular Automata [55].

1013/1/1993
 Lectures on Thermodynamics
and Statistical Mechanics, Cuernavaca,
Mexico, oral presentation Lyapunov
Exponents for Cellular Automata [57].

3/10/1993
 Statistical Methods for
SpaceTime Chaos, Prato, Italy, oral presentation
Maximal Lyapunov Exponent for 1D
Boolean Cellular Automata.

2/1994
 Forecasting and Modelling for Chaotic and Stochastic
Systems, Roma, Italy, oral
presentation Chaos and Synchronization
in Cellular Automata [59].

4/1996
 Automates cellulaires et systèmes écologiques,
Les Houches, France.

1922/8/1997
 Nonlinear cooperative
phenomena in biological systems Adriatico Research
Conference, Trieste, Italy, poster Speciation
by competition is a smooth fitness
landscape [61].

2629/8/1997
 The dynamics of complexity,
Adriatico Research Conference, Trieste, Italy.

31/83/9/1997
 la matematizzazione della
biologia: storia e problematiche attuali,
Arcidosso, Italy, oral presentation Species
formation in simple ecosystems [64].

510/4/1998
 Extended Systems: Control,
Learning and SelfOrganization Madeira
TecnopoloFunchal, Madeira, Portugal, invited presentation Species formation in simple
ecosystems.

1425/1998
 Complexity and Chaos ISI,
Torino, Italy.

2/12/1998
 Le attività della Facoltà di
Ingegneria e del CESVIT per l’innovazione
tecnologica, Firenze, Italy,
oral presentation Uno studio sull’editoria
virtuale per la
comunicazione scientifica e didattica.

2324/1/1999
 Statistical Mechanics and
Biological Evolution, Zoologisches Institut,
Monaco, Germany, invited presentation Species
formation in simple ecosystems.

2629/1/1999
 Evolutionary Biology,
Genève, Switzerland.

89/3/1999
 Scienze cognitive e Complessità IASG, Firenze, Italy.

2225/6/1999
 Theoretical Approaches to Biological and Soft
Systems The Fourth Claude
Itzykson Meeting, Saclay, France.

2528/3/2001
 XX Convegno di Fisica
Teorica e Struttura della Materia, Fai della
Paganella, Italy, oral presentation introduzione
alla dinamica evolutiva delle popolazioni.

2931/5/2001
 VI Convegno nazionale di
fisica statistica e dei sistemi complessi, Parma,
Italy, oral presentation Dinamica
evolutiva delle popolazioni: spunti di discussione.

913/7/2001
 VII Latin american workshop on nonlinear
phenomena: extended and
out of equilibrium systems LAWNP01, Cocoyoc, Morelos, Mexico,
oral presentation
Synchronization of nonchaotic
dynamical system, poster Opinion formation
and phase
transitions in a probabilistic
cellular automaton with two absorbing states, poster
Smallworld effects in evolution.

2428/6/2002
 INFMmeeting Bari, poster Lattice
Boltzmann Numerical Simulation and
Experimental Test Case, poster A cellular automata model for pattern formation in
bacterial colony: the case of
vegetative mycelial growth in Streptomyces.

1516/10/2002
 Synchronization, collective
behavior, and complex phenomena in chaotic
systems, International Workshop
of the Società Italiana Caos e Complessità (SICC),
Firenze, Italy, oral presentation Pinching
synchronization and stable chaotic systems.

9  11/10/2002
 Fifth International Conference on Cellular Automata
for Research and
Industry ACRI 2002, Genève, Switzerland, oral
presentation Opinion Formation
and Phase Transitions in a
Probabilistic Cellular Automaton with Two Absorbing
Phases [69].

24/1/2003
 Impatto dell’elearning
sulla didattica: esperienze e prospettive dell’ateneo
fiorentino, Convegno di
ateneo dell’università di Firenze, Firenze, Italy, poster
WebTeach.

25  27/10/ 2004
 From individual to collective
behaviour, Sixth International conference
on Cellular Automata for Research and Industry (ACRI2004),
Amsterdam, Holland.
oral presentation Sympatric Speciation
Through Assortative Mating in a LongRange
Cellular Automaton [77],
oral presentation Chaos in a Simple Cellular
Automaton
Model of a Uniform Society [78].

20  23/9/ 2006
 Modelling, Analysis and
Emergent Computation, Seventh International
conference on Cellular Automata for Research and Industry
(ACRI2006), Perpignan,
France, oral presentation A model of
dune formation [80]).

48/12/2006
 XV Conference on Nonequilibrium Statistical
Mechanics and Nonlinear
Physics (MEDYFINOL 06), Mar de Plata, Argentina,
invited presentation The
influence of risk perception in
epidemics.

2729/9/2007
 PPAM 2007 Seventh International Conference on
Parallel processing and
Applied Mathematics, Gdansk, Poland, invited presentation Entropy and Chaos in a
Reversible Lattice Gas Cellular
Automaton.

2729/8/2007
 13TH International Workshop on Cellular Àutomata,
The Fields Institute,
Toronto, Canada, oral presentation Boolean
Derivatives, Chaos and Synchronization in
Cellular Automata.

69/1/2008
 XXXVIII Winter Meeting on Statistical Physics,
Taxco, Guerrero, Mexico,
invited presentation Thermodynamic
Entropy and Chaos in a Discrete Hydrodynamical
System.

2325/6/2008
 XIII Convegno Nazionale di Fisica Statistica e
dei Sistemi Complessi,
Parma, Italy, poster Entropy and Chaos
in an Hydrodynamic model.

1012/9/2008
 Biophys08, Biology and beyond, Arcidosso, Italy oral
presentation Data
mining in high throughput data.

2326/9/2008
 Cellular Automata, 8th
International Conference on Cellular Automata for
Reseach and Industry, ACRI 2008, Yokohama, Japan, oral
presentation Entropy and
chaos in cellular automata [82]).

2528/5/2009
 System Theory: Modeling, Analysis and Control, Fes
(Morocco), invited
presentation Synchronization and
control of cellular automata.

2224/6/2009
 Summer Solstice 2009 International Conference
on Discrete Models of
Complex Systems, Danzig (Poland), invited presentation Small world bifurcations in
an opinion model.

Recent stages


27/712/9/2006
 Collaboration stage with A. Guarino in Tahiti
(French Polynesia).
Modeling of water circulation in a
lagoon.

28/11/2006
 Centro de investigacíon en energía (UNAM,
Temixco, Mor. Mexico)
Influencia de la perceptión del riesgo en las epidemias (invited seminar).

Publications on peer reviewed journals


S. Ciliberto, F. Bagnoli and M. Caponeri, Pattern
Selection in Thermal Convection
in an Annulus, Nuovo Cimento 12, 781 (1990).

F. Bagnoli, R. Rechtman and S. Ruffo, Some Facts
of Life, Physica A 171, 249 (1991)
(impact factor 1.369) , doi:10.1016/03784371(91)90277J.

F. Bagnoli, B. Sente, M. Dumont and R. Dagonnier, Kinetic
Phase Transitions in a
Surface Reaction Model with Local
Interactions, J. Chem. Phys. 94, 777
(1991) (impact
factor 3.044) , doi:doi:10.1063/1.460346.

F. Bagnoli, M. Droz and L. Frachebourg, Ordering
in a One dimensional Driven
Diffusive System with Parallel Dynamics,
Physica A 179, 269 (1991) (impact factor
1.369) , doi:10.1016/03784371(91)90064J.

F. Bagnoli, R. Rechtman and S. Ruffo, General
Algorithm for TwoDimensional
Totalistic Cellular Automata, J.
Comp. Phys. 101, 176 (1992) (impact factor
2.372) ,
doi:10.1016/00219991(92)90051Y.

F. Bagnoli, Boolean Derivatives and
Computation of Cellular Automata, Int. J.
Mod. Phys. C, 3, 307 (1992)
(impact factor 1.099) , doi:10.1142/S0129183192000257,
arXiv:condmat/9912353.

F. Bagnoli, R. Bulajich, R. Livi and A. Maritan, Phenomenological
Renormalization
Group for Cellular Automata, J.
Phys. A 25, L1071 (1992) (impact factor
1.886) ,
doi:10.1088/03054470/25/17/010.

F. Bagnoli, B. Chopard, M. Droz and L. Frachebourg, Critical Behavior of
a Diffusive Model with One
Absorbing State, J. Phys. A 25,
1085 (1992),
doi:10.1088/03054470/25/5/016.

F. Bagnoli, R. Rechtman and S. Ruffo, Damage
Spreading and Lyapunov Exponents
in Cellular Automata, Phys.
Lett. A 172, 34 (1992) (impact factor
1.454) ,
doi:10.1016/03759601(92)90185O,
arXiv:condmat/9811159.

F. Bagnoli, R. Rechtman and D. Zanette, Termodinamica
de modelos de gases en
redes con velocidades discretas,
Revista Mexicana de Fisica Estadistica 39,
763 (1993).

F. Bagnoli and P. Lió, Selection, Mutations and
Codon Usage in a Bacterial Model,
J. Theor. Biol. 173, 271
(1995) (impact factor 2.323) , doi:10.1006/jtbi.1995.0062,
arXiv:condmat/9808317.

F. Bagnoli, On Damage Spreading Transitions,
J. Stat. Phys. 85 151–164 (1996)
(impact factor 1.605) , doi:10.1007/BF02175559, arXiv:condmat/9508106.

F. Bagnoli, P. Palmerini and R. Rechtman, Algorithmic
Mapping Criticality into
Self Organized Criticality,
Phys. Rev. E 55, 3970 (1997) (impact
factor 2.352) ,
doi:10.1103/PhysRevE.55.3970,
arXiv:condmat/9605066.

F. Bagnoli and M. Bezzi, Speciation as
Pattern Formation by Competition in a
Smooth Fitness Landscape, Phys.
Rev. Lett. 79, 3302 (1997) (impact factor
7.218) ,
doi:10.1103/PhysRevLett.79.3302,
arXiv:condmat/9708101.

F. Bagnoli and M. Bezzi, Competition in a
Fitness Landscape, Fourth European
Conference on Artificial Life, P. Husbands and
I. Harvey (eds.), The MIT Press
(Cambridge, Massachussets, 1997) p. 101, arXiv:condmat/9702134.

F. Bagnoli and M. Bezzi, Species Formation in
Simple Ecosystems, Int. J. Mod.
Phys. C (9), 555 (1998)
(impact factor 1.099) , doi:10.1142/S0129183198000467,
arXiv:condmat/9804036.

F. Bagnoli and M. Bezzi, Eigen’s Error
Threshold and Mutational Meltdown in
a Quasispecies Model, Int. J.
Mod. Phys. C 9, 999 (1998) (impact
factor 1.099) ,
doi:10.1142/S0129183198000935,
arXiv:condmat/9807398.

F. Bagnoli, L. Baroni and P. Palmerini, Synchronization
and directed percolation
in coupled map lattices,
Phys. Rev. E 59, 409 (1999) (impact
factor 2.352) ,
doi:10.1103/PhysRevE.59.409,
arXiv:condmat/9807279.

F. Bagnoli and R. Rechtman, Synchronization and
Maximum Lyapunov Exponent
in Cellular Automata, Phys.
Rev. E 59, R1307 (1999) (impact
factor 2.352) ,
doi:10.1103/PhysRevE.59.R1307,
arXiv:condmat/9809275.

F. Bagnoli, F. Bochicchio, S. Bucci, Sensitivity of a
LR115 based radon dosemeter,
Rad. Meas. 31, 347–350 (1999) (impact
factor 0.82) ,
doi:10.1016/S13504487(99)001651.

F. Bagnoli and M. Bezzi, An evolutionary model for
simple ecosystems, Ann. Rev.
Comp. Phys. Vol. VII, edited by D. Stauffer (World
Scientific, Singapore 2000), p. 265,
arXiv:condmat/9906164.

F. Bagnoli, N. Boccara and R. Rechtman, Nature
of phase transitions in a
probabilistic cellular automaton with
two absorbing states Phys. Rev. E 63,
46116 (2001)
(impact factor 2.352) , doi:10.1103/PhysRevE.63.046116,
arXiv:condmat/0002361
.

F. Bagnoli and F. Cecconi, Synchronization of
nonchaotic dynamical systems Phys.
Lett. A 260, 917 (2001) (impact
factor 1.454) , doi:10.1016/S03759601(01)001542,
arXiv:condmat/9908127.

F. Bagnoli and M. Bezzi, Small world
effects in evolution, Phys. Rev.
E 64, 021914 (2001) (impact
factor 2.352) , doi:10.1103/PhysRevE.64.021914
arXiv:condmat/0007458.

F. Bagnoli, F. Bochicchio and S. Bucci, Further
studies on sensitivity of a LR115
based radon dosemeter, Rad.
Meas. 34, 207210 (2001) (impact
factor 0.82) ,
doi:10.1016/S13504487(01)001536.
 F.
Bagnoli and M. Bezzi, Is the “Small World” Effect
Relevant to Evolution?, Rivista
di Biologia 94, 487 (2001).
 F.
Bagnoli, F. Cecconi, A. Flammini, A. Vespignani, Short period attractors and
nonergodic behavior in the
deterministic fixed energy sandpile model, Europhys.
Lett. 63, 512–519 (2003)
(impact factor 2.206) ; arXiv:condmat/0207674.
doi:10.1209/epl/i2003005618
 F.
Bagnoli, F. Bignone, F. Cecconi and A. Politi, Information,
complexité et biologie,
in L’hèritage
de Kolmogorov en physique, R. Livi and A. Vulpiani (eds),
(Belin, Paris
2003) p. 133–156
 F.
Bagnoli, F. Bignone, F. Cecconi and A. Politi, Information,
Complexity and Biology,
in The Kolmogorov Legacy in Physics,
R. Livi and A. Vulpiani (eds), (Lecture Notes
in Physics 636, Springer, Berlin
2004) pp. 123–146. doi:10.1007/b93809.

Franco Bagnoli, Carlo Guardiani, A microscopic
model of evolution of recombination,
WSEAS Transactions on Biology and Biomedicine 4, 416–421 (2004).

F. Bagnoli, A. Berrones and F. Franci, De gustibus
disputandum (forecasting opinions
by knowledge networks),
Physica A 332, 509–518 (2004) (impact
factor 1.369) ,
doi:10.1016/j.physa.2003.09.065,
arXiv:condmat/0306431.

F. Bagnoli, C. Guardiani, A microscopic model
of evolution of recombination,
Physica A 347, 489–533 (2005)
(impact factor 1.369) , doi:10.1016/j.physa.2004.08.067,
arXiv:qbio/0408020.

F. Bagnoli, C. Guardiani, A model of sympatric
speciation through assortive mating,
Physica A 347, 534–574 (2005), doi:10.1016/j.physa.2004.08.068,
arXiv:qbio/0402038.

F. Bagnoli, F. Franci and R. Rechtman, Phase
transitions of extendedrange
probabilistic cellular with two
absorbing states, Phys. Rev. E 71,
046108 (2005) (impact
factor 2.352) , doi:10.1103/PhysRevE.71.046108,
arXiv:arXiv:condmat/0405604.
 F.
Bagnoli, R. Rechtman, Synchronization
universality classes and stability of
smooth coupled map lattices,
Phys. Rev. E 73, 026202 (2006) (impact
factor 2.352) ,
doi:10.1103/PhysRevE.73.026202,
arXiv:condmat/0507205.
 F.
Bagnoli, P. Lió and L. Sguanci, Modeling
viral coevolution: HIV multiclonal
persistence and competition dynamics,
Physica A 366, 333–346 (2006) (impact
factor
1.369) , doi:10.1016/j.physa.2005.10.055,
arXiv:qbio.PE/0509006.
 C.
Guardiani and F. Bagnoli, A toy model of polymer
stretching, J. Chem. Phys. 125,
084908 (2006) (impact factor 3.044) ., doi:10.1063/1.2335639, arXiv:qbio.BM/0605039.
 L.
Sguanci, F. Bagnoli and P. Lió, Modeling
HIV quasispecies evolutionary
dynamic BMC Evolutionary
Biology 7, S5 (2007) (impact
factor 4.09) .
doi:10.1186/147121487S2S5.
 F.
Bagnoli, P. Lió, L. Sguanci Risk perception in
epidemic modeling. Phys. Rev. E
76, 061904061913 (2007)
(impact factor 2.352) , doi:10.1103/PhysRevE.76.061904,
arXiv:0705.1974.
 F.
Bagnoli, T. Carletti, D. Fanelli, A. Guarino, A. Guazzini, Dynamical affinity in
opinion dynamics modeling, Phys.
Rev. E 76, 066105 (2007) (impact factor
2.352) ,
doi:10.1103/PhysRevE.76.066105,
arXiv:physics/0701204.
 T.
Carletti, D. Fanelli, A. Guarino, F. Bagnoli, A. Guazzini, Birth and Death in a
Continuous opinion dynamics modeling,
Europ. Phys. J. B 64, 285–292 (2008)
(impact
factor 2.012) , doi:10.1140/epjb/e2008002973,
arXiv:0807.4062.
 F.
Bagnoli, T. Carletti, D. Fanelli, A. Guarino, A. Guazzini, Modelling the role of
affinity in opinion dynamics,
Phys. Rev. E. 76 066105 (2008) (impact factor 2.352) .
doi:10.1103/PhysRevE.76.066105.
 F.
Bagnoli and R. Rechtman, Thermodynamic
entropy and chaos in a discrete
hydrodynamical system, Phys.
Rev. E 79, 041115(2009) (impact factor
2.352) ,
doi:10.1103/PhysRevE.79.041115,
arXiv:condmat/0702074.
 J.
V.A. Nguyen, Z. KoukolívaNicola, F. Bagnoli and P. Lió, Noise and nonlinearities
in highthroughput data, J.
Stat. Mech P01014 (2009) (impact factor 2.418) ,
doi:10.1088/17425468/2009/01/P01014.
 J.
Barré, A. Ciani, D. Fanelli, F. Bagnoli, S. Ruffo, Finite
size effects for the Ising model
on random graphs with varying dilution,
Physica A 388, 34133425 (2009) (impact
factor 1.369) , doi:10.1016/j.physa.2009.04.024,
arXiv:0902.0564.

Other publications and proceedings


F. Bagnoli and A. Francescato, A Cellular
Automata Generator in Advances
Nonlinear Dynamics and Stochastic
Processes II, G. Paladin, A. Vulpiani (eds.),
(World Scientific, Singapore 1987).

F. Bagnoli, S. Ciliberto, A. Francescato, R. Livi and S. Ruffo, Cellular Automata
Model for a Fluid Experiment in Chaos and Complexity, R. Livi et al. (eds.),
(World
Scientific, Singapore 1987) p. 318.

F. Bagnoli and A. Francescato, A Cellular Automata
Machine in Cellular Automata
and Modeling of Complex Physical
Systems, P. Manneville et al. (eds.), (Springer,
Berlin 1990) p. 312.

F. Bagnoli, S. Ciliberto, R. Livi and S. Ruffo, Phase Transitions in Convection
Experiments in Cellular Automata and Modeling of Complex Physical
Systems,
P. Manneville et al. (eds.), (Springer, Berlin 1990) p. 291.

F. Bagnoli, S. Isola, R. Livi, G. MartinezMekler and S. Ruffo, Periodic Orbits in a
Coupled Map Lattice Model in Cellular Automata and Modeling of Complex Physical
Systems, P. Manneville et
al. (eds.), (Springer, Berlin 1990) p. 282.

F. Bagnoli, B. Sente and M. Dumont, A Model
of Catalytic Reaction with
Local Interactions in Microscopic Aspects of NonLinearity in Condensed
Matter,
V. Tognetti (ed.) (Plenum, New York 1991) p. 95.

F. Bagnoli and D. Zanette, Definition of
Temperature for Discrete Velocity Models,
preprint del Dipartimento di Matematica Applicata n. 7 (1991)

F. Bagnoli and R. Livi, Una Guida agli Automi
Cellulari, rapporto ENEA (1991).

F. Bagnoli, R. Bulajich, R. Livi and A. Maritan Renormalization
Group Analysis of
Directed Models, N. Boccara,
E. Goles, S. Martinez and P. Picco (eds), NATO ASI
Series C: Mathematical and Physical Sciences Vol 396 (Kluwer,
Dordrecht 1993).

F. Bagnoli, R. Rechtman and S. Ruffo, Maximal
Lyapunov Exponent for 1D Boolean
Cellular Automata, N. Boccara,
E. Goles, S. Martinez and P. Picco (eds), NATO ASI
Series C: Mathematical and Physical Sciences Vol 396 (Kluwer,
Dordrecht 1993).

R. Rechtman, A. Salcido and F. Bagnoli, Thermomechanical
Effects in a Nine
Velocities TwoDimensional Lattice
Gas Automata, in Complexity and
Evolution,
R. Livi, J.P. Nadal and N. Packard (eds), (Nova Science,
Huntington 1993).

F. Bagnoli, R. Rechtman and S. Ruffo, Lyapunov
Exponents for Cellular Automata,
in Lectures on Thermodynamics and
Statistical Mechanics, Proc. XXII Winter Meeting
on Statistical Physics, 10 al 13 de enero de 1993, Cuernavaca
Mor., M. L. de Haro and
C. Varea (eds.) (World Scientific, Singapore 1994) p.
200–213.

F. Bagnoli, G. Guasti and P. Liò, Translation
Optimization in Bacteria: Statistical
Models, in Non
Linear Excitations in Biomolecules, M. Peyrard (ed.),
(SpringerVerlag,
Berlin 1995) p. 405

F. Bagnoli and R. Rechtman, Chaos and
Synchronization in Cellular Automata, in
Forecasting and Modelling for Chaotic
and Stochastic Systems, A. Bellacicco, G. Koch
and A. Vulpiani, eds. (FrancoAngeli, Milano 1995) p. 145.

F. Bagnoli, L. Baroni and P. Palmerini, Synchronization
of spatially extended chaotic
systems and directed percolation,
in Science and supercoputing at CINECA,
M. Voli,
editor, report 1997 (CINECA, Bologna 1998) p. 490.

F. Bagnoli and M. Bezzi, Speciation by competition
is a smooth fitness landscape, in
Nonlinear cooperative phenomena in
biological physics, proceedings of the Adriatico
Research conference, ICTP, trieste 1922 August 1997, edited
by L. Matsson (World
Scientific, Singapore 1998) p. 332.

F. Bagnoli and M. Bezzi, Path Integral Formulation
of Evolving Ecosystems, in Path
Integrals from peV to TeV,
Edited by R. Casalbuoni et.al. (World Scientific, Singapore
1999) p. 493.

O. Antolín, F. Bagnoli, R. Bulajich, J.A. Gómez and
A. Rechtman (eds.),
Problemas para la 14^{a} olimpiada de
Matemáticas, Sociedad Matemática
Mexicana
(2000).

F. Bagnoli and M. Bezzi, in Species
formation in simple ecosystems, La
matematizzazione della biologia:
storia e problematiche attuali, P. Cerrai and
P. Freguglia, editors (QuattroVenti, Urbino 2000) p. 23.

F. Bagnoli and S. Ruffo, eds. Dinamical Modeling
in Biotechnologies (World Scientific,
Singapore 2001).

F. Bagnoli, P. Palmerini and N. Boccara, Phase
Transitions in a Probabilistic
Cellular Automaton with Two
Absorbing States in Dinamical
Modeling in
Biotechnologies, F. Bagnoli
and S. Ruffo, eds. (World Scientific, Singapore 2001),
arXiv:condmat/0405604.

F. Bagnoli, Cellular Automata in Dinamical Modeling in Biotechnologies, F. Bagnoli
and S. Ruffo, eds. (World Scientific, Singapore 2001), arXiv:condmat/9810012.
 F.
Bagnoli and R. Rechtman, Lyapunov exponents and
synchronization of cellular
automata in Complex Systems, E. Goles and S. Martinez (eds),
Nonlinear Phenomena
and Complex Systems, vol. 6 (Kluwer, Dordrecht 2001) p.
69104.
 F.
Bagnoli, F. Franci and R. Rechtman, Opinion
Formation and Phase Transitions in
a Probabilistic Cellular Automaton with
Two Absorbing Phases in Cellular Automata,
proceedings of the 5th International Conference on Cellular
Automata for Research and
Industry ACRI2002, Geneva, Switzerland, October 911, 2002,
S. Bandini, B. Chopard
and M. Tomassini, editors, (Lecture Notes in Computer Science
LNCS 2493, Springer,
Berlin 2002) p. 249–258, arXiv:nlin.AO/0511001.

F. Bagnoli, F. Franci
and A.
Sterbini http://fie.engrng.pitt.edu/fie2002/papers/1624.pdfWebTeach:
web
tools for teachers and students, proceedings of the
32nd ASEE/IEEE
Frontiers in
Education Conference 2002 (Stipes Publishing LLC,
Champaign, IL 2002) p 229 229.
 F.
Bagnoli, F. Franci and A. Sterbini, WebTeach: an
integrated webbased cooperative
environment for distance teaching,
Proceedings of the 14th international conference on
Software engineering and knowledge engineering 2002 , Ischia,
Italy (ACM Press New
York, 2002) p. 519520.
 F.
Franci, A. Berrones, F. Bagnoli, Opinion
formation and protein networks, poster
INFNMeeting, Genova 23–25 Jun. 2003.
 F.
Bagnoli, F. Franci, A. Sterbini, and F. Mugelli, WebTeach in Practice: The
Entrance Test to the Engineering
Faculty in Florence, proceedings of the 3rd IASTED
International Conference on WEBBASED EDUCATION WBE
2004, Innsbruck,
Austria February 16–18, 2004. Published in WEBBASED
EDUCATION, V. Uskov
(ed.) (ACTA Press Calgary Canada, 2004), arXiv:cs.HC/0310013.
 F.
Bagnoli and L. Sguanci, Simulation of the erosion
and deposition processes occurring
at the bottom of a riverbed,
poster at the INFM meeting 2004 (Genova, 8–10/6/2004).
 F.
Bagnoli, C. Guardiani, M. Vassalli, L. Casetti Polymer
stretching: experimental
setup and simple Monte Carlo
simulations, poster in the Lectures in
Complex Systems,
(Firenze 6–8/10/2004).

F. Bagnoli, C. Guardiani A microscopic model
of evolution of recombination
and sympatric speciation,
poster in the Lectures in Complex Systems,
(Firenze
6–8/10/2004), arXiv:qbio.PE/0408020.
 F.
Bagnoli, C. Guardiani Sympatric Speciation
Through Assortative Mating in
a LongRange Cellular Automaton in
Cellular Automata, proceedings of the
6th
International Conference on Cellular Automata for Research
and Industry ACRI2004,
Amsterdam, The Netherlands, October 25–28, 2004, P.
Sloot, B. Chopard and A.
Hoekstra, editors, (Lecture Notes in Computer Science LNCS
3305, Springer, Berlin
2004) pp. 405–414, doi:10.1007/b102055.
 F.
Bagnoli, F. Franci and R. Rechtman, Chaos
in a Simple Cellular Automaton
Model of a Uniform Society in Cellular Automata, proceedings of the 6th
International
Conference on Cellular Automata for Research and Industry
ACRI2004, Amsterdam,
The Netherlands, October 25–28, 2004, edited by Peter Sloot,
Bastien Chopard and
Alfons Hoekstra (Lecture Notes in Computer Science LNCS 3305,
Springer, Berlin
2004) pp. 513–522, arXiv:nlin.AO/0511002, doi:10.1007/b102055.
 L.
Sguanci, P. Lió and F. Bagnoli, The influence of
risk perception in epidemics:
a cellular agent model, in Cellular Automata, proceedings of the 7th
International
Conference on Cellular Automata for Research and Industry
ACRI2006, Perpignan,
France September 2006, S. El Yacoubi, B. Chopard and
S. Bandini, editors
(Lecture Notes in Computer Science LNCS 4173, Springer,
Berlin 2006) pp. 321–329,
doi:10.1007/11861201_38,
arXiv:qbio.PE/0607010.
 L.
Sguanci, F. Bagnoli and D. Fanelli, A cellular
automata model for ripple dynamics,
in Cellular Automata,
proceedings of the 7th International Conference on Cellular
Automata for Research and Industry ACRI2006, Perpignan,
France September 2006,
S. El Yacoubi, B. Chopard and S. Bandini, editors (Lecture
Notes in Computer Science
LNCS 4173, Springer, Berlin 2006) pp. 407–416, doi:10.1007/11861201_48.
 L.
Sguanci, P. Lió and F. Bagnoli, Modeling
Evolutionary Dynamics of HIV Infection in
Computational Methods in Systems
Biology, proceedings of the International Conference
CMSB 2006, Trento, Italy, October 1819, 2006, S. Istrail, P.
Pevzner and M. Waterman,
editors, (Lecture Notes in Computer Science LNCS 4210,
Springer, Berlin 2006) pp.
196211, arXiv:qbio.PE/0603003,
doi:10.1007/11885191_14.
 F.
Bagnoli and R. Rechtman, Entropy and Chaos in a
Lattice Gas Cellular Automata
in Cellular Automata,
proceedings of the 7th International Conference on Cellular
Automata for Research and Industry ACRI2008, Yokohama, Japan,
September 2326,
(Lecture Notes in Computer Science LNCS 5191, Springer,
Berlin 2008), pp. 120–127,
doi:10.1007/9783540799924.
 I.
X. Y. Leung, G. Gibbs, F. Bagnoli, A. Sorathiya, P. Liò , Contact Network
Modeling of Flu Epidemics in Cellular Automata, proceedings of the 7th
International
Conference on Cellular Automata for Research and Industry
ACRI2008, Yokohama,
Japan, September 2326, (Lecture Notes in Computer Science
LNCS 5191, Springer,
Berlin 2008), pp 354–361, doi:10.1007/9783540799924.
 F.
Bagnoli, A. Guazzini and P. Liò, Human
Heuristics for Autonomous Agents,
Proceedings of the conference BioInspired
Computing and Communication, Cambridge
2007 (Lecture Notes in Computer Science LNCS 5151,
Springer, Berlin 2008), p.
340–351, doi:10.1007/9783540921912,
arXiv:0801.3048.
 F.
Di Patti and F. Bagnoli, Biologically
inspired classifier, Proceedings of the
conference BioInspired Computing and
Communication, Cambridge 2007, (Lecture
Notes in Computer Science LNCS 5151, Springer, Berlin
2008) p. 332–339,
doi:10.1007/9783540921912_29,
arXiv:0711.2615v1.

V.A. Nguyen, Z. KoukolívaNicola, F. Bagnoli, P. Lió, Bayesian Inference on
Hidden Knowledge in HighThroughput
Molecular Biology Data, proceedings of the
conference PRICAI 2008: Trends in
Artificial Intelligence, Hanoi, Vietnam 2008
(Lecture Notes in Computer Science LNCS 5351, Springer,
Berlin 2008) p. 829–838,
doi:10.1007/9783540891970.

F. Bagnoli, Interaction Based Computing in
Physics, in Interaction Based
Computing in Physics, R.A. Meyer
editor (Sporinger, New York 2009) p. 4902–4920
doi:10.1007/9780387304403_291.
 F.
Bagnoli, Evolutionary Models for Simple
Biosystems in Handbook of biological
systems, S. Boccaletti, V.
Latora, and Y. Moreno, eds., World Scientific Lecture Notes
in Complex Systems  Vol. 10. ISBN: 9789812838797 (World
Scientific, 2010) pp.
329372.

Jobs


19861990
 Sofware consultant c/o Soluzioni EDP srl.

4/2/199131/10/2001
 Technical position in the Department of Applied
Mathematics,
University of Florence, Via S. Marta, 3 I50139 Firenze,
Italy.

since 1/11/2001
 Researcher in the Department of Energy, University
of Florence, Via
S. Marta, 3 I50139 Firenze, Italy.

Teaching


2001/2002
 Assistent (20 hours) of the course “Physics 1
(Mechanics, 4 credits, 48 hours),
holder S. Ruffo, first year of Environmental Engineering
(first cycle, 19 ans), 87 students.
Holder of the course
Physics 2 (Thermodynamics), first year of Environmental
Engineering, 3 credits (36 hours), 87 students.

2002/2003
 Holder of the course Physics 1 (Mechanics, 4
credits, 48 hours), first year of
Environmental Engineering, 51 students.
Holder of the course
Physics 2 (Thermodynamics), first year of Environmental
Engineering, 3 credits (36 hours), 51 students.

2003/2004
 Holder of the course Mechanics and Thermodynamics
(ex Physics 1 and 2, 7
credits, 84 hours), first year of Environmental Engineering,
69 students.
Holder of the course
Statistical Physics and Diffusive Phenomena (Course opened after
my request, 5 credits, 50 hours), first year of the master in
Environmental Engineering, 8
students. The course is part of the curriculum of the PhD
school in Nonlinear Dynamics
and Complex Systems (4 students).

2004/2005
 Holder of the course Mechanics and Thermodynamics (7
credits, 84 hours), first
year of Environmental Engineering, 62 students.
Holder of the course
Statistical Physics and Diffusive Phenomena (5 credits, 50 hours),
first year of the master in Environmental Engineering, 8
students. The course is part
of the curriculum of the PhD school in Nonlinear Dynamics and
Complex Systems (3
students).

2005/2006
 Holder of the course Mechanics and Thermodynamics (7
credits, 84 hours), first
year of Environmental Engineering, 37 students.
Holder of the course
Statistical Physics and Diffusive Phenomena (5 credits, 50 hours),
first year of the master in Environmental Engineering, 40
students. The course is part
of the curriculum of the PhD school in Nonlinear Dynamics and
Complex Systems (6
students).

2006/2007
 Holder of the course General Physics 1 (ex Mechanics
and Thermodynamics, 6
credits, 72 hours), first year of Environmental Engineering,
32 students.
Holder of the course
Statistical Physics and Diffusive Phenomena (5 credits, 50 hours),
first year of the master in Environmental Engineering, 88
students. The course is part
of the curriculum of the PhD school in Nonlinear Dynamics and
Complex Systems (4
students).

2007/2008
 Holder of the course General Physics 2
(Electromagnetism, 6 credits, 72 hours),
first year of Environmental Engineering, 32 students.
Holder of the course
Statistical Physics and Diffusive Phenomena (5 credits, 50 hours),
first year of the master in Environmental Engineering, 88
students. The course is part
of the curriculum of the PhD school in Nonlinear Dynamics and
Complex Systems (4
students).

2008/2009
 Statistical Physics and Diffusive Phenomena (5
credits, 50 hours), first year of
the master in Environmental Engineering. The course is part
of the curriculum of the
PhD school in Nonlinear Dynamics and Complex Systems.

Other activities

 I’m part of the certification
commettee of the course (first cycle) of Environmental
Engineering.
 With S. Ruffo, D. Fanelli, A.
Guarino, we developed a series of popular conferences
about “physics in everyday life”.
 I collaborate with the second
Italian channel of Swiss radio “Impulso Web”
http://www.rtsi.ch/trasm/impulsoweb/.
 Development of WebTeach,
a web system for exam scheduling, remote assistance
and automatic quiz management.
 Cohead (with S. Ruffo) of the
“FiSiCo” (Physics of Complex Systems) laboratory,
in the department of Energy, University of Florence.

Research coordination tasks

since
2005: Local coordinator (Florence) of TO61 INFN experiment
(Physics and
Biology).

1994
 Supervisor
(70%, with S. Ruffo) of the master thesis in Physics (Florence) of
Giovanna
Guasti Dynamics of Ising models and
Protein Syntesis in Bacteria [58].

1995
 Supervisor
(90%, with M. Buiatti) of the master thesis in Biology (Florence) of
Mauro
Romanelli Two Models using Discrete
Variables of the Mithotic Dynamics in Cellular
Populations.

1996
 Supervisor
(100%) of the master thesis in Physics (Florence) of Paolo
Palmerini
Numerical and Analitical Methods
for the Study of the Critical Properties of
Probabilistic Discrete Systems [13,
18,
60,
66].

1998
 Cotutor
(30%, supervisor R. Livi) of the PhD in Physics (Florence) of Lucia
Baroni
noise, Chaos and Synchronization in
Dynamical Systems with Many Degrees of Freedom
(Chapter 4: Stochastic Synchronization
in Spatially Extended Systems) [18,
60].

1999
 Cotutor
(30%, supervisor R. Livi) of the PhD in Physics (Bologna) of Michele
Bezzi
Modeling biology by cellular automata (chapter
2: A cellular automata model for a
simple ecosystem) [14,
16,
21,
62].

2000
 Supervisor
(90%, with M. Buiatti) of the master thesis in Biology (Florence) of
Carlo
Guardiani A Theoretical Model for the
Evolution of QuasiSpecies [77,
30,
32,
33].

2003
 Supervisor
(100%) of the master thesis in Environmental Engineering (Florence) of
Luca Sguanci Interaction between a
Fluid Phase and a Granular Medium: Applicability
of the Lattice Boltzmann Method [80].

2004
 Supervisor
(60%, with S. Ruffo) of the PhD in Nonlinear Dynamics and Complex
Systems (Florence) of Fabio Franci Models
of Social Phenomena.

2005
 Supervisor
(10%, with G. Manfrida, A. Barbaro and F. Giovannini) of the
master thesis in Environmental Engineering (Florence) of
Valentina Lapolla Analysis,
Application, Evaluation and Comparison
of Diffusive Models in Complex Landscapes:
a Case Study in Sambuca, Tavarnelle
V.P..

2006
 Supervisor
(100%) of the PhD in Nonlinear Dynamics and Complex Systems
(Florence) of Luca Sguanci Modeling
infective diseases: from viral coevolution to risk
perception.

2008
 Supervisor
(100%) of the master (second level) in Scientific Journalism for
Biomedical
Sciences (Florence) of Michele Viti Sciences in the Valley: a project of cultural
animation in the Mugello.

2008
 Supervisor
(80% with L. Solari and L. Cappietti) of the master thesis
in
Environmental Engineering (Florence) of Giulio Mariotti Modello Idromorfodinamico
Lattice Boltzmann finalizzato allo
studio di fenomeni erosivi localizzati.

2009
 Supervisor
(100%) of the PhD in Nonlinear Dynamics and Complex Systems
(Florence) of Andrea Guazzini Computational
Models of Cognitive Activity:from Neural
to Social Dynamics.

2009
 Cotutor
(10%) of the PhD in Nonlinear Dynamics and Complex Systems (Florence)
of Francesca Di Patti FiniteSize
Effects in Stochastic Models of Population Dynamics:
Applications to Biomedicine and Biology.

Organization of schools, workshops, congresses
and seminars.


56/1996
 Dynamical Modeling in Biotechologies,
F. Bagnoli, S. Ruffo, F. Celada and
F. Bignone, (ISIVilla Gualino – Torino) [65].

1118/1/2000
 Linear and nonlinear
analysis of complex data, F. Bagnoli, S. Ruffo,
P. Poggi, H. Kantz, SOCRATES Intensive Programme 2000 (Villa
Agape – Firenze).

dal 1997
 Coffee talks (with A. Torcini e S. Lepri)
(INO/Dip. Mat. Appl./Dip. Fisica –
Firenze)
http://www.dma.unifi.it/seminari/coffeetalk/index.html.

1718/12/1999
 Linux meeting (with
others) (Facoltà di Ingegneria – Firenze),
http://meeting.firenze.linux.it/flugmeeting99/.

dal 2000
 Seminari tecnici del FLUG (Dipartimento di
Matematica Applicata – Firenze),
http://www.firenze.linux.it/seminari.

12/4/2000
 Comportamento caotico dei
sistemi NON caotici (Dipartimento di Fisica –
Firenze).

1214/2/2002
 Miniscuola di biologia 1: Le Basi della Biologia
Molecolare (con L. Casetti
 Firenze)
http://www.complex.unifi.it/scuole/miniscuola1

35/2/2003
 Miniscuola di biologia 2: I Sistemi Biologici, (con
M. Bezzi, L. Casetti, A.
Torcini – Firenze)
http://www.complex.unifi.it/scuole/miniscuola2

68/10/2004
 Lectures in Complex Systems (con L. Casetti, A.
Torcini, R. Livi – Firenze).

56/9/2008
 Extreme events in Urban Dynamics (with F.
Semboloni and S. Ruffo –
Firenze), http://www.csdc.unifi.it/upload/sub/ExtremeEvents/index.html

Other items

 Good knowledge of many operating
systems (Unix/Linux/MacOSX, MSWindows,
VMS), programming languages and utilities (C, C++,
Java, FORTRAN, MPI,
JavaScript, Perl, Bash, Matlab, NetLogo, Mathematica),
network protocols (like
e.g. tcp/ip, http, ftp), markup languages (XML/HTML,
TeX/LaTeX, PostScript), and
of programming/numerical elements (lists, queues, hashes,
numerical algorithms, etc.)
 Referee for Phys. Rev. E, Phys. Rev.
Lett., Physica A, J. Comp. Phys., J. Stat. Mech.,
Communications in Nonlinear Sciences and Numerical
Simulations, Computers and
Mathematics with Applications.
 Good knowledge of Italian (mother
tongue), English, French and Spanish.
Florence, 7 marzo 2010
Franco
Bagnoli

Updating...
Ċ Franco Bagnoli, 7 mar 2010, 02:42
